Codon usage analysis
HELP
| Amino | Codon |
yeast |
Arabidopsis |
Chr1 | Chr2 | Chr3 | Chr4 | Chr5 | Chr6 | Chr7 | Chr8 | Chr9 | Chr10 | Chr11 | Chr12 |
| A | GCA |
1.19 |
1.11 |
1.70 |
1.72 |
1.77 |
1.80 |
|
|
1.70 |
1.66 |
1.73 |
1.78 |
|
|
| A | GCC |
0.88 |
0.62 |
3.24 |
3.21 |
3.04 |
2.73 |
|
|
3.34 |
3.34 |
3.31 |
2.76 |
|
|
| A | GCG |
0.45 |
0.55 |
2.91 |
2.93 |
2.66 |
2.17 |
|
|
3.04 |
3.00 |
3.12 |
2.34 |
|
|
| A | GCT |
1.47 |
1.72 |
1.86 |
1.98 |
1.97 |
2.03 |
|
|
1.87 |
1.89 |
1.94 |
2.01 |
|
|
| C | TGC |
0.76 |
0.79 |
1.30 |
1.29 |
1.20 |
1.12 |
|
|
1.30 |
1.26 |
1.27 |
1.14 |
|
|
| C | TGT |
1.24 |
1.21 |
0.61 |
0.59 |
0.63 |
0.70 |
|
|
0.58 |
0.59 |
0.58 |
0.69 |
|
|
| D | GAC |
0.70 |
0.62 |
2.81 |
2.79 |
2.85 |
2.71 |
|
|
2.88 |
2.84 |
2.84 |
2.73 |
|
|
| D | GAT |
1.30 |
1.38 |
2.32 |
2.41 |
2.65 |
2.78 |
|
|
2.36 |
2.39 |
2.27 |
2.72 |
|
|
| E | GAA |
1.40 |
1.05 |
2.03 |
2.04 |
2.30 |
2.56 |
|
|
1.94 |
2.01 |
2.01 |
2.48 |
|
|
| E | GAG |
0.60 |
0.95 |
3.82 |
3.88 |
4.10 |
3.87 |
|
|
3.81 |
3.88 |
3.84 |
3.81 |
|
|
| F | TTC |
0.81 |
0.94 |
2.16 |
2.12 |
2.14 |
2.15 |
|
|
2.20 |
2.10 |
2.09 |
2.18 |
|
|
| F | TTT |
1.19 |
1.06 |
1.24 |
1.23 |
1.33 |
1.50 |
|
|
1.21 |
1.13 |
1.13 |
1.45 |
|
|
| G | GGA |
0.91 |
1.46 |
1.60 |
1.60 |
1.59 |
1.64 |
|
|
1.64 |
1.62 |
1.71 |
1.67 |
|
|
| G | GGC |
0.79 |
0.56 |
3.19 |
3.19 |
2.88 |
2.39 |
|
|
3.32 |
3.31 |
3.34 |
2.58 |
|
|
| G | GGG |
0.49 |
0.64 |
1.79 |
1.80 |
1.75 |
1.62 |
|
|
1.80 |
1.81 |
1.90 |
1.64 |
|
|
| G | GGT |
1.81 |
1.34 |
1.39 |
1.48 |
1.45 |
1.52 |
|
|
1.47 |
1.48 |
1.45 |
1.52 |
|
|
| H | CAC |
0.72 |
0.75 |
1.46 |
1.38 |
1.33 |
1.32 |
|
|
1.41 |
1.44 |
1.44 |
1.34 |
|
|
| H | CAT |
1.28 |
1.25 |
1.08 |
1.07 |
1.16 |
1.25 |
|
|
1.04 |
1.07 |
1.05 |
1.25 |
|
|
| I | ATA |
0.85 |
0.74 |
0.83 |
0.83 |
0.86 |
0.96 |
|
|
0.81 |
0.79 |
0.81 |
0.91 |
|
|
| I | ATC |
0.78 |
1.02 |
1.92 |
1.83 |
1.88 |
1.88 |
|
|
1.89 |
1.88 |
1.82 |
1.89 |
|
|
| I | ATT |
1.38 |
1.24 |
1.32 |
1.33 |
1.44 |
1.56 |
|
|
1.28 |
1.29 |
1.24 |
1.54 |
|
|
| K | AAA |
1.17 |
0.98 |
1.53 |
1.47 |
1.63 |
1.86 |
|
|
1.42 |
1.43 |
1.44 |
1.83 |
|
|
| K | AAG |
0.83 |
1.02 |
2.88 |
3.00 |
3.39 |
3.42 |
|
|
2.91 |
2.91 |
2.86 |
3.39 |
|
|
| L | CTA |
0.85 |
0.65 |
0.74 |
0.74 |
0.78 |
0.89 |
|
|
0.75 |
0.74 |
0.74 |
0.85 |
|
|
| L | CTC |
0.36 |
0.99 |
2.58 |
2.69 |
2.37 |
2.16 |
|
|
2.72 |
2.72 |
2.64 |
2.26 |
|
|
| L | CTG |
0.67 |
0.64 |
2.12 |
2.14 |
1.94 |
1.91 |
|
|
2.14 |
2.10 |
2.08 |
1.85 |
|
|
| L | CTT |
0.79 |
1.53 |
1.42 |
1.52 |
1.44 |
1.54 |
|
|
1.45 |
1.43 |
1.41 |
1.51 |
|
|
| L | TTA |
1.66 |
0.84 |
0.57 |
0.58 |
0.60 |
0.71 |
|
|
0.54 |
0.55 |
0.56 |
0.71 |
|
|
| L | TTG |
1.67 |
1.36 |
1.37 |
1.41 |
1.48 |
1.66 |
|
|
1.37 |
1.36 |
1.33 |
1.66 |
|
|
| M | ATG |
- |
- |
2.28 |
2.35 |
2.33 |
2.31 |
|
|
2.35 |
2.31 |
2.30 |
2.39 |
|
|
| N | AAC |
0.81 |
0.94 |
1.79 |
1.74 |
1.77 |
1.85 |
|
|
1.77 |
1.73 |
1.69 |
1.83 |
|
|
| N | AAT |
1.19 |
1.06 |
1.38 |
1.43 |
1.55 |
1.62 |
|
|
1.37 |
1.37 |
1.33 |
1.62 |
|
|
| P | CCA |
1.63 |
1.35 |
1.40 |
1.41 |
1.39 |
1.50 |
|
|
1.43 |
1.42 |
1.41 |
1.49 |
|
|
| P | CCC |
0.63 |
0.43 |
1.32 |
1.23 |
1.20 |
1.18 |
|
|
1.23 |
1.24 |
1.30 |
1.14 |
|
|
| P | CCG |
0.50 |
0.69 |
1.97 |
1.95 |
1.73 |
1.57 |
|
|
2.03 |
2.03 |
2.11 |
1.63 |
|
|
| P | CCT |
1.24 |
1.53 |
1.30 |
1.34 |
1.36 |
1.47 |
|
|
1.31 |
1.35 |
1.35 |
1.42 |
|
|
| Q | CAA |
1.37 |
1.14 |
1.25 |
1.24 |
1.48 |
1.62 |
|
|
1.20 |
1.24 |
1.22 |
1.62 |
|
|
| Q | CAG |
0.63 |
0.86 |
2.02 |
2.02 |
2.09 |
2.10 |
|
|
1.93 |
1.93 |
1.90 |
2.04 |
|
|
| R | AGA |
2.83 |
2.14 |
1.04 |
1.07 |
1.08 |
1.11 |
|
|
1.05 |
1.08 |
1.05 |
1.13 |
|
|
| R | AGG |
1.27 |
1.22 |
1.57 |
1.63 |
1.63 |
1.55 |
|
|
1.67 |
1.67 |
1.67 |
1.55 |
|
|
| R | CGA |
0.43 |
0.71 |
0.79 |
0.66 |
0.71 |
0.78 |
|
|
0.70 |
0.72 |
0.76 |
0.76 |
|
|
| R | CGC |
0.36 |
0.41 |
1.83 |
1.79 |
1.54 |
1.42 |
|
|
1.83 |
1.88 |
1.83 |
1.50 |
|
|
| R | CGG |
0.25 |
0.54 |
1.60 |
1.52 |
1.40 |
1.25 |
|
|
1.52 |
1.65 |
1.71 |
1.28 |
|
|
| R | CGT |
0.85 |
0.97 |
0.79 |
0.72 |
0.73 |
0.84 |
|
|
0.70 |
0.75 |
0.76 |
0.84 |
|
|
| S | AGC |
0.67 |
0.75 |
1.67 |
1.66 |
1.54 |
1.42 |
|
|
1.67 |
1.66 |
1.67 |
1.43 |
|
|
| S | AGT |
0.97 |
0.97 |
0.83 |
0.86 |
0.86 |
0.94 |
|
|
0.84 |
0.82 |
0.79 |
0.91 |
|
|
| S | TCA |
1.28 |
1.24 |
1.19 |
1.30 |
1.17 |
1.18 |
|
|
1.21 |
1.25 |
1.23 |
1.13 |
|
|
| S | TCC |
0.94 |
0.73 |
1.71 |
1.70 |
1.52 |
1.41 |
|
|
1.66 |
1.72 |
1.73 |
1.42 |
|
|
| S | TCG |
0.59 |
0.61 |
1.32 |
1.33 |
1.23 |
1.08 |
|
|
1.31 |
1.33 |
1.40 |
1.10 |
|
|
| S | TCT |
1.56 |
1.69 |
1.20 |
1.30 |
1.22 |
1.31 |
|
|
1.23 |
1.23 |
1.16 |
1.25 |
|
|
| T | ACA |
1.23 |
1.25 |
1.12 |
1.13 |
1.16 |
1.22 |
|
|
1.10 |
1.10 |
1.10 |
1.19 |
|
|
| T | ACC |
0.85 |
0.78 |
1.53 |
1.44 |
1.44 |
1.47 |
|
|
1.49 |
1.51 |
1.47 |
1.47 |
|
|
| T | ACG |
0.56 |
0.60 |
1.27 |
1.17 |
1.12 |
1.04 |
|
|
1.26 |
1.23 |
1.30 |
1.10 |
|
|
| T | ACT |
1.36 |
1.36 |
1.00 |
0.98 |
1.09 |
1.22 |
|
|
0.95 |
0.97 |
0.97 |
1.15 |
|
|
| V | GTA |
0.88 |
0.61 |
0.67 |
0.64 |
0.69 |
0.76 |
|
|
0.63 |
0.61 |
0.63 |
0.74 |
|
|
| V | GTC |
0.81 |
0.74 |
2.03 |
2.00 |
1.95 |
1.88 |
|
|
2.12 |
2.07 |
2.06 |
1.89 |
|
|
| V | GTG |
0.78 |
1.03 |
2.44 |
2.41 |
2.39 |
2.26 |
|
|
2.50 |
2.43 |
2.42 |
2.32 |
|
|
| V | GTT |
1.54 |
1.62 |
1.43 |
1.50 |
1.57 |
1.66 |
|
|
1.44 |
1.43 |
1.43 |
1.61 |
|
|
| W | TGG |
- |
- |
1.40 |
1.35 |
1.44 |
1.46 |
|
|
1.42 |
1.41 |
1.45 |
1.47 |
|
|
| Y | TAC |
0.86 |
0.94 |
1.51 |
1.42 |
1.39 |
1.46 |
|
|
1.44 |
1.37 |
1.38 |
1.42 |
|
|
| Y | TAT |
1.14 |
1.06 |
0.93 |
0.90 |
1.05 |
1.15 |
|
|
0.87 |
0.86 |
0.85 |
1.12 |
|
|